PUBLICATIONS

Azzouz, S., L.A. Walker, A. Doerner, K. Geisel, A.K. Rodriguez-Rivera, Y. Li, D.H. Roossien, D. Cai. Optimized neuron tracing using post hoc reanalysis. IEEE 20th International Symposium on Biomedical Imaging (ISBI), 2023. 

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L.A. Walker, J.S. Williams, Y. Li, D.H. Roossien, N.S. Michki, D. Cai. nGauge: Integrated and extensible neuron morphology analysis in Python. Neuroinformatics, 2022; 20:755.

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Li, Y., L.A. Walker, Y. Zhao, E.M. Edwards, N.S. Michki, H.P.J. Cheng, M. Ghazzi, T.Y. Chen, M. Chen, D.H. Roossien, D. Cai. Bitbow: a digital format of Brainbow enables highly efficient neuronal lineage tracing and morphology reconstruction in single brains. Frontiers in Neural Circuits, 2021; 2021.732183.

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Duan, B., L.A. Walker, F.Y. Shen, D.H. Roossien, D. Cai, Y. Yan. Unsupervised neural tracing in densiely labeled multispectral Brainbow images. IEEE 18th International Symposium on Biomedical Imaging (ISBI), 2021; 1122-1126. 

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Patel, P.R., P. Popov, C.M. Caldwell, E. Welle, D. Egert, J.R. Pettibone, D.H. Roossien, J. Becker, J. Berke, C.A. Chestek, D. Cai. High Density carbon fiber arrays for chronic electrophysiology, fast scan cyclic voltametry, and correlative anatomy. J. Neural Engineering, 2020; 17:056029.

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Roossien, D. H., J.M. Webb, B.V. Sadis, Y. Yan, L.Y. Min, A.S. Dizaji, L.J. Bogart, C. Mazuski, R.S. Huth, J.S. Stecher, S. Akula, J.W. Lichtman, T.K. Hensch, E.D. Herzog, D. Cai. Neuronal tracing and analysis by multrispectral tracing in densely labeled mouse brain. Bioinformatics, 2019; 35:3544-3546.               

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Hill, M., E. Rios, S. Sudhakar, D. Roossien, C. Caldwell, D. Cai, O. Ahmed, S. Lempka, C. Chestek. Quantitative simulation of extracellular single unit recording from the surface of cortex. Journal of Neural Engineering, 2018; 15:056007.

Yan, Y., D.H. Roossien, B.V. Sadis, J.J. Corso, D. Cai. A recurrent neural network approach for automated neural tracing in multispectral 3D images. bioRxiv doi.org/10.1101/230441.

Roossien, D. H. and D. Cai. Imaging neural architecture in Brainbow samples. Methods in Molecular Biology, 2017. 1642:211-228.

Sümbül, U., D. H. Roossien, F. Chen, N. Barry, E.S. Boyden, D. Cai, J.P. Cunningham, L. Paninski. Automated scalable segmentation of neurons from multispectral images. Advances in Neural Information Processing Systems, 2016; 28.

Tillberg, P.W., F. Chen, K. D. Piatkevich, Y. Zhao, C. Yu, B. P. English, L. Gao, A. Martorell, H.J. Suk, F. Yoshida, E.M. DeGennaro, D.H. Roossien, G. Gong, U. Seneviratne, S.R. Tannenbaum, R. Desimone, D. Cai, E.S. Boyden. Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies. Nature Biotechnology, 2016. 34(9):987-992.

Roossien, D.H., K. Miller, G. Gallo. Ciliobrevins as tools for studying dynein motor function. Frontiers in Cellular Neuroscience, 2015. 9: 252.

Roossien, D.H., P. Lamoureux, K.E. Miller. Cytoplasmic dynein pushes the cytoskeletal meshwork forward during axonal elongation. J. Cell Sci., 2014. 127 (16), 3593-3602.

Roossien, D. H., P. Lamoureux, D. Van Vactor, K.E. Miller. Drosophila growth cones advance by forward translocation of the neuronal cytoskeletal meshwork in vivo. PLOS One, 2013. 8(11):e80136.

Ooi, A., J.C. Wong, D. Petillo, D. Roossien, V. Perrier-Trudova, D. Whitten, B.W. Min, M.H. Tan, Z. Zhang, X.J. Yang, M. Zhou, B. Gardie, V. Molinie, S. Richard, P.H. Tan, B.T. Teh, K.A. Furge. An antioxidant response phenotype shared between hereditary and sporadic type 2 papillary renal cell carcinoma. Cancer Cell, 2011. 20(4): 511-23.

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